Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LAML rs72996491 chr2:240544997 C/T 0.000126 108 13.2 25.35 0 KM Plot
LAML rs72998461 chr2:240547461 T/C 0.000174 106 13.2 33.47 0 KM Plot
LAML rs72998484 chr2:240559532 G/A 0.00015 108 13.1 33.47 0 KM Plot
LAML rs72998493 chr2:240563206 G/A 3.22E-5 106 13.2 33.47 0 KM Plot
LAML rs73003590 chr19:16246325 C/T 0.000103 109 16.23 9.13 0 KM Plot
LAML rs73043053 chr6:169290941 A/C 0.000118 109 15.23 11.17 0 KM Plot
LAML rs73166572 chr2:1055984 C/G 1.51E-8 106 15.2 16.3 0 KM Plot
LAML rs73217929 chr8:13969730 C/T 0.000165 110 16.17 13.15 0 KM Plot
LAML rs73217933 chr8:13974188 G/C 2.59E-8 107 15.2 16.23 0 KM Plot
LAML rs73268099 chr17:28592445 C/G 0.000116 111 19.82 15.7 6.1 KM Plot
LAML rs7336280 chr13:71369779 C/T 1.89E-5 110 0 5 16.27 KM Plot
LAML rs7342921 chr17:28612448 G/C 0.000116 111 19.82 15.7 6.1 KM Plot
LAML rs73449251 chr13:24042272 C/T 1.47E-7 109 13.15 21.78 1 KM Plot
LAML rs73570846 chr13:114924360 G/A 3.67E-5 110 13.2 19.33 2.55 KM Plot
LAML rs73579379 chr13:114620782 G/A 6.13E-7 109 13.1 19.33 0.5 KM Plot